PH01001339G0170's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT5G59900 : 0.00E+00
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001339
Strand: +
| Region | Start | End |
| gene | 87563 | 91061 |
| mRNA | 87563 | 91061 |
| exon | 87563 | 91061 |
| CDS | 87768 | 90419 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 198 | 226 |
| PF13041.5 | PPR_2 | 230 | 277 |
| PF13041.5 | PPR_2 | 333 | 382 |
| PF12854.6 | PPR_1 | 399 | 432 |
| PF13041.5 | PPR_2 | 438 | 487 |
| PF13041.5 | PPR_2 | 508 | 556 |
| PF13041.5 | PPR_2 | 581 | 623 |
| PF13041.5 | PPR_2 | 651 | 697 |
| PF01535.19 | PPR | 721 | 749 |
| PF12854.6 | PPR_1 | 753 | 779 |
| PF13041.5 | PPR_2 | 787 | 834 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.