Annotation of co-expression genes

PH01001353G0120's details annotation

1.Annotation

ICBR annotation: pleiotropic drug resistance protein, putative, expressed

Blast result AT1G15520 : 0
Blast annotation: pleiotropic drug resistance 12

2.Location

Scaffold: PH01001353
Strand: -

RegionStartEnd
gene95746103634
mRNA95746103634
exon9574696430
exon9652096774
exon9687397044
exon9741897551
exon9809398194
exon9886698949
exon9904399333
exon9944699778
exon100441100538
exon100961101140
exon101227101349
exon101437101596
exon102004102305
exon102390102441
exon102480102555
exon102901102933
exon103145103634
CDS9616796430
CDS9652096774
CDS9687397044
CDS9741897551
CDS9809398194
CDS9886698949
CDS9904399333
CDS9944699778
CDS100441100538
CDS100961101140
CDS101227101349
CDS101437101596
CDS102004102305
CDS102390102441
CDS102480102555
CDS102901102933
CDS103145103302

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08370.10PDR_assoc211269
PF00005.26ABC_tran410561
PF01061.23ABC2_membrane698878

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.