PH01001358G0290's details annotation
1.Annotation
ICBR annotation: glycine dehydrogenase, putative, expressed
Blast result AT4G33010 : 7.00E-59
Blast annotation: glycine decarboxylase P-protein 1
2.Location
Scaffold: PH01001358
Strand: -
| Region | Start | End |
| gene | 187328 | 188862 |
| mRNA | 187328 | 188862 |
| exon | 187328 | 187836 |
| exon | 187957 | 188862 |
| CDS | 187474 | 187836 |
| CDS | 187957 | 188133 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02347.15 | GDC-P | 1 | 51 |
| PF02347.15 | GDC-P | 59 | 142 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004375 | glycine dehydrogenase (decarboxylating) activity |
| GO:0006546 | glycine catabolic process |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.