PH01001361G0020's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT4G13650 : 7.00E-136
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001361
Strand: -
| Region | Start | End |
| gene | 17314 | 25750 |
| mRNA | 17314 | 25750 |
| exon | 17314 | 20072 |
| exon | 20245 | 20284 |
| exon | 20815 | 21209 |
| exon | 21317 | 21465 |
| exon | 21540 | 21706 |
| exon | 23349 | 23401 |
| exon | 23492 | 25750 |
| CDS | 17560 | 20072 |
| CDS | 20245 | 20284 |
| CDS | 20815 | 21209 |
| CDS | 21317 | 21465 |
| CDS | 21540 | 21706 |
| CDS | 23349 | 23401 |
| CDS | 23492 | 24248 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 632 | 656 |
| PF01535.19 | PPR | 659 | 688 |
| PF01535.19 | PPR | 760 | 789 |
| PF13041.5 | PPR_2 | 858 | 898 |
| PF13041.5 | PPR_2 | 959 | 1006 |
| PF01535.19 | PPR | 1063 | 1091 |
| PF01535.19 | PPR | 1135 | 1156 |
| PF13041.5 | PPR_2 | 1161 | 1208 |
| PF01535.19 | PPR | 1236 | 1259 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.