PH01001364G0420's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G40290 : 2.00E-129
Blast annotation: Eukaryotic translation initiation factor 2 subunit 1
2.Location
Scaffold: PH01001364
Strand: +
| Region | Start | End |
| gene | 283481 | 286088 |
| mRNA | 283481 | 286088 |
| exon | 283481 | 284308 |
| exon | 285525 | 285671 |
| exon | 285748 | 285852 |
| exon | 285926 | 286088 |
| CDS | 283793 | 284308 |
| CDS | 285525 | 285671 |
| CDS | 285748 | 285852 |
| CDS | 285926 | 286024 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00575.22 | S1 | 15 | 88 |
| PF07541.11 | EIF_2_alpha | 126 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 2 subunit 1 | ko03013 | K03237 |
| Protein processing in endoplasmic reticulum | translation initiation factor 2 subunit 1 | ko04141 | K03237 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003743 | translation initiation factor activity |
| GO:0005850 | eukaryotic translation initiation factor 2 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.