PH01001364G0450's details annotation
1.Annotation
ICBR annotation: OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT2G27920 : 5.00E-139
Blast annotation: serine carboxypeptidase-like 51
2.Location
Scaffold: PH01001364
Strand: -
| Region | Start | End |
| gene | 301271 | 305334 |
| mRNA | 301271 | 305334 |
| exon | 301271 | 301515 |
| exon | 301653 | 301785 |
| exon | 301877 | 301929 |
| exon | 302584 | 302634 |
| exon | 302762 | 302798 |
| exon | 302909 | 303114 |
| exon | 303695 | 303800 |
| exon | 303890 | 303996 |
| exon | 304059 | 304102 |
| exon | 304420 | 304660 |
| exon | 304768 | 304875 |
| exon | 304976 | 305070 |
| exon | 305171 | 305334 |
| CDS | 301447 | 301515 |
| CDS | 301653 | 301785 |
| CDS | 301877 | 301929 |
| CDS | 302584 | 302634 |
| CDS | 302762 | 302798 |
| CDS | 302909 | 303114 |
| CDS | 303695 | 303800 |
| CDS | 303890 | 303996 |
| CDS | 304059 | 304102 |
| CDS | 304420 | 304660 |
| CDS | 304768 | 304875 |
| CDS | 304976 | 305070 |
| CDS | 305171 | 305306 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 27 | 456 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.