Annotation of co-expression genes

PH01001365G0540's details annotation

1.Annotation

ICBR annotation: DNA repair protein Rad51, putative

Blast result AT5G57450 : 2.40E-45
Blast annotation: homolog of X-ray repair cross complementing 3 (XRCC3)

2.Location

Scaffold: PH01001365
Strand: +

RegionStartEnd
gene299833303136
mRNA299833303136
exon299833303136
CDS301704302579

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08423.10Rad5133247

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Homologous recombinationDNA-repair protein XRCC3ko03440K10880

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003684damaged DNA binding
GO:0005524ATP binding
GO:0006259DNA metabolic process
GO:0006281DNA repair
GO:0008094DNA-dependent ATPase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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