PH01001367G0170's details annotation
1.Annotation
ICBR annotation: tobamovirus multiplication protein, putative, expressed
Blast result AT4G21790 : 7.30E-60
Blast annotation: tobamovirus multiplication 1
2.Location
Scaffold: PH01001367
Strand: +
| Region | Start | End |
| gene | 110731 | 116376 |
| mRNA | 110731 | 116376 |
| exon | 110731 | 111481 |
| exon | 113611 | 113651 |
| exon | 113835 | 113927 |
| exon | 114023 | 114094 |
| exon | 114255 | 114301 |
| exon | 114592 | 114655 |
| exon | 114952 | 115005 |
| exon | 115939 | 116016 |
| exon | 116090 | 116376 |
| CDS | 111172 | 111481 |
| CDS | 113611 | 113651 |
| CDS | 113835 | 113927 |
| CDS | 114023 | 114094 |
| CDS | 114255 | 114301 |
| CDS | 114592 | 114655 |
| CDS | 114952 | 115005 |
| CDS | 115939 | 116016 |
| CDS | 116090 | 116182 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06454.10 | DUF1084 | 113 | 179 |
| PF06454.10 | DUF1084 | 188 | 283 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.