PH01001385G0510's details annotation
1.Annotation
ICBR annotation: la domain containing protein, putative, expressed
Blast result AT5G21160 : 4.70E-85
Blast annotation: LA RNA-binding protein
2.Location
Scaffold: PH01001385
Strand: +
| Region | Start | End |
| gene | 353145 | 363179 |
| mRNA | 353145 | 363179 |
| exon | 353145 | 354029 |
| exon | 354427 | 354485 |
| exon | 354808 | 354850 |
| exon | 355273 | 355840 |
| exon | 355894 | 356095 |
| exon | 356429 | 356519 |
| exon | 356620 | 356691 |
| exon | 356782 | 357332 |
| exon | 358141 | 358210 |
| exon | 359213 | 359314 |
| exon | 360323 | 360639 |
| exon | 360745 | 360885 |
| exon | 361543 | 361647 |
| exon | 362041 | 363179 |
| CDS | 353775 | 354029 |
| CDS | 354427 | 354485 |
| CDS | 354808 | 354850 |
| CDS | 355273 | 355840 |
| CDS | 355894 | 356095 |
| CDS | 356429 | 356519 |
| CDS | 356620 | 356691 |
| CDS | 356782 | 357332 |
| CDS | 358141 | 358210 |
| CDS | 359213 | 359314 |
| CDS | 360323 | 360639 |
| CDS | 360745 | 360885 |
| CDS | 361543 | 361647 |
| CDS | 362041 | 362251 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05383.16 | La | 367 | 422 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.