Annotation of co-expression genes

PH01001393G0490's details annotation

1.Annotation

ICBR annotation: adaptor complexes medium subunit family domain containing protein, expressed

Blast result AT1G60780 : 0.00E+00
Blast annotation: Clathrin adaptor complexes medium subunit family protein

2.Location

Scaffold: PH01001393
Strand: +

RegionStartEnd
gene303996309263
mRNA303996309263
exon303996305470
exon305574305723
exon305807305869
exon305954306130
exon306222306325
exon307891307998
exon308087308183
exon308293308390
exon308473308614
exon308703308825
exon308927309263
CDS305342305470
CDS305574305723
CDS305807305869
CDS305954306130
CDS306222306325
CDS307891307998
CDS308087308183
CDS308293308390
CDS308473308614
CDS308703308825
CDS308927309025

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01217.19Clat_adaptor_s5132
PF00928.20Adap_comp_sub160427

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0030131clathrin adaptor complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.