PH01001401G0120's details annotation
1.Annotation
ICBR annotation: vegetative incompatibility protein HET-E-1, putative
Blast result AT2G41500 : 3.00E-170
Blast annotation: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
2.Location
Scaffold: PH01001401
Strand: +
| Region | Start | End |
| gene | 77001 | 82492 |
| mRNA | 77001 | 82492 |
| exon | 77001 | 78018 |
| exon | 78956 | 79409 |
| exon | 79565 | 79762 |
| exon | 79850 | 79931 |
| exon | 80622 | 82492 |
| CDS | 77330 | 78018 |
| CDS | 78956 | 79409 |
| CDS | 79565 | 79762 |
| CDS | 79850 | 79931 |
| CDS | 80622 | 80716 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08799.10 | PRP4 | 74 | 102 |
| PF00400.31 | WD40 | 246 | 282 |
| PF00400.31 | WD40 | 286 | 323 |
| PF00400.31 | WD40 | 334 | 365 |
| PF00400.31 | WD40 | 374 | 407 |
| PF00400.31 | WD40 | 455 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | U4/U6 small nuclear ribonucleoprotein PRP4 | ko03041 | K12662 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008380 | RNA splicing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.