PH01001401G0190's details annotation
1.Annotation
ICBR annotation: adapitin protein, putative, expressed
Blast result AT4G11380 : 0.00E+00
Blast annotation: Adaptin family protein
2.Location
Scaffold: PH01001401
Strand: -
| Region | Start | End |
| gene | 113315 | 120915 |
| mRNA | 113315 | 120915 |
| exon | 113315 | 114047 |
| exon | 114166 | 114369 |
| exon | 114457 | 114646 |
| exon | 114764 | 115161 |
| exon | 115249 | 115341 |
| exon | 115767 | 115946 |
| exon | 116020 | 116083 |
| exon | 116213 | 116424 |
| exon | 116709 | 116801 |
| exon | 116890 | 117069 |
| exon | 117556 | 117691 |
| exon | 117780 | 118030 |
| exon | 118353 | 118484 |
| exon | 118576 | 118689 |
| exon | 118814 | 119011 |
| exon | 120341 | 120915 |
| CDS | 113751 | 114047 |
| CDS | 114166 | 114369 |
| CDS | 114457 | 114646 |
| CDS | 114764 | 115161 |
| CDS | 115249 | 115341 |
| CDS | 115767 | 115946 |
| CDS | 116020 | 116083 |
| CDS | 116213 | 116424 |
| CDS | 116709 | 116801 |
| CDS | 116890 | 117069 |
| CDS | 117556 | 117691 |
| CDS | 117780 | 118030 |
| CDS | 118353 | 118484 |
| CDS | 118576 | 118689 |
| CDS | 118814 | 119011 |
| CDS | 120341 | 120427 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000740 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis CAMK_CAMKL-CHK1 (from iTAK) shikimate 3-dehydrogenase (NADP+) activity, 3-dehydroquinate dehydratase activity, intracellular protein transport, membrane coat, clathrin adaptor complex, COPII vesicle coat, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01602.19 | Adaptin_N | 15 | 177 |
| PF01602.19 | Adaptin_N | 178 | 577 |
| PF02883.19 | Alpha_adaptinC2 | 726 | 821 |
| PF09066.9 | B2-adapt-app_C | 833 | 940 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0006886 | intracellular protein transport |
| GO:0008565 | protein transporter activity |
| GO:0015031 | protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
| GO:0030131 | clathrin adaptor complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.