PH01001404G0350's details annotation
1.Annotation
ICBR annotation: terpene synthase, putative, expressed
Blast result AT5G23960 : 4.20E-71
Blast annotation: terpene synthase 21
2.Location
Scaffold: PH01001404
Strand: -
| Region | Start | End |
| gene | 286387 | 291892 |
| mRNA | 286387 | 291892 |
| exon | 286387 | 287459 |
| exon | 287647 | 287865 |
| exon | 289890 | 290160 |
| exon | 290496 | 290868 |
| exon | 290999 | 291260 |
| exon | 291749 | 291892 |
| CDS | 287169 | 287459 |
| CDS | 287647 | 287865 |
| CDS | 289890 | 290160 |
| CDS | 290496 | 290868 |
| CDS | 290999 | 291260 |
| CDS | 291749 | 291844 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01397.20 | Terpene_synth | 33 | 190 |
| PF03936.15 | Terpene_synth_C | 221 | 317 |
| PF03936.15 | Terpene_synth_C | 328 | 447 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0008152 | metabolic process |
| GO:0010333 | terpene synthase activity |
| GO:0016829 | lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.