PH01001430G0070's details annotation
1.Annotation
ICBR annotation: thaumatin, putative, expressed
Blast result AT4G38660 : 2.00E-91
Blast annotation: Pathogenesis-related thaumatin superfamily protein
2.Location
Scaffold: PH01001430
Strand: -
| Region | Start | End |
| gene | 58075 | 61438 |
| mRNA | 58075 | 61438 |
| exon | 58075 | 59405 |
| exon | 59874 | 60549 |
| exon | 60696 | 61438 |
| CDS | 59204 | 59405 |
| CDS | 59874 | 60549 |
| CDS | 60696 | 60765 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00314.16 | Thaumatin | 35 | 243 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.