PH01001441G0290's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G21520 : 0.00E+00
Blast annotation: Sec14p-like phosphatidylinositol transfer family protein
2.Location
Scaffold: PH01001441
Strand: -
| Region | Start | End |
| gene | 191409 | 198519 |
| mRNA | 191409 | 198519 |
| exon | 191409 | 191710 |
| exon | 192049 | 192094 |
| exon | 192155 | 192229 |
| exon | 192372 | 192757 |
| exon | 192851 | 192977 |
| exon | 193729 | 193845 |
| exon | 193936 | 194034 |
| exon | 194133 | 194232 |
| exon | 194322 | 194371 |
| exon | 194449 | 194550 |
| exon | 194661 | 194738 |
| exon | 194829 | 195095 |
| exon | 195178 | 195277 |
| exon | 195390 | 195690 |
| exon | 196885 | 197025 |
| exon | 198231 | 198519 |
| CDS | 191601 | 191710 |
| CDS | 192049 | 192094 |
| CDS | 192155 | 192229 |
| CDS | 192372 | 192757 |
| CDS | 192851 | 192977 |
| CDS | 193729 | 193845 |
| CDS | 193936 | 194034 |
| CDS | 194133 | 194232 |
| CDS | 194322 | 194371 |
| CDS | 194449 | 194550 |
| CDS | 194661 | 194738 |
| CDS | 194829 | 195095 |
| CDS | 195178 | 195277 |
| CDS | 195390 | 195690 |
| CDS | 196885 | 197025 |
| CDS | 198231 | 198375 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000180 | transmembrane transport, integral to membrane, CAMK_AMPK (from iTAK) GH100 Glycoside_Hydrolases GH32 Glycoside_Hydrolases Golgi membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03765.14 | CRAL_TRIO_N | 187 | 214 |
| PF00650.19 | CRAL_TRIO | 239 | 404 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.