PH01001444G0340's details annotation
1.Annotation
ICBR annotation: omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
Blast result AT4G30950 : 5.00E-90
Blast annotation: fatty acid desaturase 6
2.Location
Scaffold: PH01001444
Strand: +
| Region | Start | End |
| gene | 240628 | 247766 |
| mRNA | 240628 | 247766 |
| exon | 240628 | 242912 |
| exon | 243380 | 243612 |
| exon | 243699 | 243842 |
| exon | 243986 | 244137 |
| exon | 244653 | 244775 |
| exon | 247139 | 247253 |
| exon | 247346 | 247766 |
| CDS | 242687 | 242912 |
| CDS | 243380 | 243612 |
| CDS | 243699 | 243842 |
| CDS | 243986 | 244137 |
| CDS | 244653 | 244775 |
| CDS | 247139 | 247253 |
| CDS | 247346 | 247507 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00487.23 | FA_desaturase | 184 | 261 |
| PF00487.23 | FA_desaturase | 288 | 332 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Biosynthesis of unsaturated fatty acids | omega-6 fatty acid desaturase (delta-12 desaturase) [EC:1.14.19.-] | ko01040 | K10255 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.