PH01001457G0240's details annotation
1.Annotation
ICBR annotation: phosphoenolpyruvate carboxylase, putative, expressed
Blast result AT1G53310 : 0.00E+00
Blast annotation: phosphoenolpyruvate carboxylase 1
2.Location
Scaffold: PH01001457
Strand: -
| Region | Start | End |
| gene | 143986 | 149242 |
| mRNA | 143986 | 149242 |
| exon | 143986 | 144437 |
| exon | 144560 | 144946 |
| exon | 145125 | 146123 |
| exon | 146221 | 146375 |
| exon | 146506 | 146593 |
| exon | 146688 | 146791 |
| exon | 146870 | 147092 |
| exon | 147289 | 147373 |
| exon | 147456 | 147847 |
| exon | 148692 | 149242 |
| CDS | 144141 | 144437 |
| CDS | 144560 | 144946 |
| CDS | 145125 | 146123 |
| CDS | 146221 | 146375 |
| CDS | 146506 | 146593 |
| CDS | 146688 | 146791 |
| CDS | 146870 | 147092 |
| CDS | 147289 | 147373 |
| CDS | 147456 | 147847 |
| CDS | 148692 | 148856 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00311.16 | PEPcase | 162 | 964 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pyruvate metabolism | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00620 | K01595 |
| Carbon fixation in photosynthetic organisms | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00710 | K01595 |
| Carbon fixation pathways in prokaryotes | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00720 | K01595 |
| Methane metabolism | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00680 | K01595 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006099 | tricarboxylic acid cycle |
| GO:0008964 | phosphoenolpyruvate carboxylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.