PH01001467G0430's details annotation
1.Annotation
ICBR annotation: EF hand family protein, putative, expressed
Blast result AT4G26470 : 4.20E-78
Blast annotation: Calcium-binding EF-hand family protein
2.Location
Scaffold: PH01001467
Strand: -
| Region | Start | End |
| gene | 300609 | 305497 |
| mRNA | 300609 | 305497 |
| exon | 300609 | 300924 |
| exon | 301721 | 301895 |
| exon | 302531 | 302715 |
| exon | 303336 | 305497 |
| CDS | 300815 | 300924 |
| CDS | 301721 | 301895 |
| CDS | 302531 | 302715 |
| CDS | 303336 | 303531 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00036.31 | EF-hand_1 | 59 | 85 |
| PF13499.5 | EF-hand_7 | 141 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.