PH01001470G0090's details annotation
1.Annotation
ICBR annotation: ribosomal protein L22, putative, expressed
Blast result AT1G67430 : 2.70E-81
Blast annotation: Ribosomal protein L22p/L17e family protein
2.Location
Scaffold: PH01001470
Strand: +
| Region | Start | End |
| gene | 59945 | 63469 |
| mRNA | 59945 | 63469 |
| exon | 59945 | 60261 |
| exon | 60350 | 60386 |
| exon | 60491 | 60531 |
| exon | 62259 | 62489 |
| exon | 62592 | 62712 |
| exon | 62768 | 62835 |
| exon | 63135 | 63469 |
| CDS | 60259 | 60261 |
| CDS | 60350 | 60386 |
| CDS | 60491 | 60531 |
| CDS | 62259 | 62489 |
| CDS | 62592 | 62712 |
| CDS | 62768 | 62835 |
| CDS | 63135 | 63173 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001837 | Ribosome ribosome biogenesis, ribonucleoprotein complex, large ribosomal subunit, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00237.18 | Ribosomal_L22 | 17 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L17e | ko03011 | K02880 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015934 | large ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.