PH01001480G0220's details annotation
1.Annotation
ICBR annotation: bile acid sodium symporter family protein, putative, expressed
Blast result AT4G22840 : 2.00E-122
Blast annotation: Sodium Bile acid symporter family
2.Location
Scaffold: PH01001480
Strand: -
| Region | Start | End |
| gene | 183412 | 186754 |
| mRNA | 183412 | 186754 |
| exon | 183412 | 183816 |
| exon | 183855 | 183937 |
| exon | 184014 | 184267 |
| exon | 184423 | 184675 |
| exon | 184766 | 184959 |
| exon | 185750 | 186754 |
| CDS | 183763 | 183816 |
| CDS | 183855 | 183937 |
| CDS | 184014 | 184267 |
| CDS | 184423 | 184675 |
| CDS | 184766 | 184959 |
| CDS | 185750 | 185925 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01758.15 | SBF | 63 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006814 | sodium ion transport |
| GO:0008508 | bile acid:sodium symporter activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.