PH01001488G0350's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT5G51980 : 6.60E-93
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01001488
Strand: +
| Region | Start | End |
| gene | 278078 | 282746 |
| mRNA | 278078 | 282746 |
| exon | 278078 | 278858 |
| exon | 279001 | 279096 |
| exon | 279673 | 279762 |
| exon | 279883 | 280131 |
| exon | 280218 | 280397 |
| exon | 281849 | 281949 |
| exon | 282083 | 282746 |
| CDS | 278496 | 278858 |
| CDS | 279001 | 279096 |
| CDS | 279673 | 279762 |
| CDS | 279883 | 280131 |
| CDS | 280218 | 280397 |
| CDS | 281849 | 281949 |
| CDS | 282083 | 282239 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000018 | integral to membrane, transmembrane transport, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM000483 | GRAS Transcription_Regulator(from PlantTFDB) TKL-Pl-4 (from iTAK) Arachidonic_acid_metabolism glycogen biosynthetic process, amino_acid_transmembrane_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 117 | 148 |
| PF00400.31 | WD40 | 235 | 269 |
| PF00400.31 | WD40 | 274 | 308 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.