PH01001494G0080's details annotation
1.Annotation
ICBR annotation: protein kinase family protein, putative, expressed
Blast result AT1G61150 : 7.70E-36
Blast annotation: LisH and RanBPM domains containing protein
2.Location
Scaffold: PH01001494
Strand: +
| Region | Start | End |
| gene | 58622 | 64745 |
| mRNA | 58622 | 64745 |
| exon | 58622 | 59418 |
| exon | 59520 | 59638 |
| exon | 59920 | 60041 |
| exon | 60121 | 60236 |
| exon | 61324 | 61349 |
| exon | 61519 | 61650 |
| exon | 62059 | 62088 |
| exon | 62280 | 62423 |
| exon | 62590 | 62731 |
| exon | 63680 | 63843 |
| exon | 64389 | 64745 |
| CDS | 59238 | 59418 |
| CDS | 59520 | 59638 |
| CDS | 59920 | 60041 |
| CDS | 60121 | 60236 |
| CDS | 61324 | 61349 |
| CDS | 61519 | 61650 |
| CDS | 62059 | 62088 |
| CDS | 62280 | 62423 |
| CDS | 62590 | 62731 |
| CDS | 63680 | 63843 |
| CDS | 64389 | 64451 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00582.25 | Usp | 16 | 152 |
| PF10607.8 | CLTH | 188 | 233 |
| PF10607.8 | CLTH | 241 | 337 |
| PF03662.13 | Glyco_hydro_79n | 337 | 388 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006950 | response to stress |
| GO:0016020 | membrane |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.