PH01001495G0120's details annotation
1.Annotation
ICBR annotation: cytoskeletal protein, putative, expressed
Blast result AT1G62390 : 9.00E-176
Blast annotation: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
2.Location
Scaffold: PH01001495
Strand: -
| Region | Start | End |
| gene | 87329 | 91522 |
| mRNA | 87329 | 91522 |
| exon | 87329 | 89622 |
| exon | 90804 | 90843 |
| exon | 90963 | 91522 |
| CDS | 87460 | 89622 |
| CDS | 90804 | 90843 |
| CDS | 90963 | 90967 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00564.23 | PB1 | 251 | 320 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.