PH01001497G0170's details annotation
1.Annotation
ICBR annotation: SPRY-domain containing protein, putative, expressed
Blast result AT1G35470 : 6.00E-140
Blast annotation: SPla/RYanodine receptor (SPRY) domain-containing protein
2.Location
Scaffold: PH01001497
Strand: +
| Region | Start | End |
| gene | 123729 | 132799 |
| mRNA | 123729 | 132799 |
| exon | 123729 | 124610 |
| exon | 125110 | 125289 |
| exon | 125756 | 125842 |
| exon | 127639 | 127684 |
| exon | 128297 | 128373 |
| exon | 128761 | 128914 |
| exon | 130005 | 130073 |
| exon | 130301 | 130360 |
| exon | 131203 | 131289 |
| exon | 131454 | 132799 |
| CDS | 124228 | 124610 |
| CDS | 125110 | 125289 |
| CDS | 125756 | 125842 |
| CDS | 127639 | 127684 |
| CDS | 128297 | 128373 |
| CDS | 128761 | 128914 |
| CDS | 130005 | 130073 |
| CDS | 130301 | 130360 |
| CDS | 131203 | 131289 |
| CDS | 131454 | 131738 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00622.27 | SPRY | 97 | 224 |
| PF10607.8 | CLTH | 304 | 441 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.