PH01001523G0540's details annotation
1.Annotation
ICBR annotation: CREG1 precursor, putative, expressed
Blast result AT2G04690 : 1.80E-26
Blast annotation: Pyridoxamine 5-phosphate oxidase family protein
2.Location
Scaffold: PH01001523
Strand: +
| Region | Start | End |
| gene | 276784 | 280262 |
| mRNA | 276784 | 280262 |
| exon | 276784 | 277323 |
| exon | 277620 | 277655 |
| exon | 277746 | 277947 |
| exon | 278968 | 280262 |
| CDS | 276932 | 277323 |
| CDS | 277620 | 277655 |
| CDS | 277746 | 277947 |
| CDS | 278968 | 279480 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13883.5 | Pyrid_oxidase_2 | 127 | 210 |
| PF14223.5 | Retrotran_gag_2 | 211 | 327 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0010181 | FMN binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.