PH01001523G0600's details annotation
1.Annotation
ICBR annotation: hhH-GPD superfamily base excision DNA repair protein, putative, expressed
Blast result AT3G47830 : 9.90E-73
Blast annotation: DNA glycosylase superfamily protein
2.Location
Scaffold: PH01001523
Strand: +
| Region | Start | End |
| gene | 306637 | 310001 |
| mRNA | 306637 | 310001 |
| exon | 306637 | 307950 |
| exon | 308055 | 308243 |
| exon | 309395 | 309451 |
| exon | 309541 | 310001 |
| CDS | 307621 | 307950 |
| CDS | 308055 | 308243 |
| CDS | 309395 | 309451 |
| CDS | 309541 | 309783 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00730.24 | HhH-GPD | 81 | 217 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | endonuclease III [EC:4.2.99.18] | ko03410 | K10773 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006281 | DNA repair |
| GO:0006284 | base-excision repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.