PH01001526G0360's details annotation
1.Annotation
ICBR annotation: sister chromatid cohesion 2, putative, expressed
Blast result AT5G15540 : 0.00E+00
Blast annotation: PHD finger family protein
2.Location
Scaffold: PH01001526
Strand: -
| Region | Start | End |
| gene | 244151 | 270273 |
| mRNA | 244151 | 270273 |
| exon | 244151 | 245299 |
| exon | 245408 | 246406 |
| exon | 246482 | 247001 |
| exon | 248353 | 248607 |
| exon | 248683 | 248816 |
| exon | 248902 | 249135 |
| exon | 249207 | 249266 |
| exon | 249489 | 249650 |
| exon | 250399 | 250504 |
| exon | 252128 | 252297 |
| exon | 252808 | 253091 |
| exon | 257287 | 257461 |
| exon | 257848 | 257877 |
| exon | 257997 | 258161 |
| exon | 258239 | 258298 |
| exon | 258457 | 258507 |
| exon | 258583 | 258790 |
| exon | 258861 | 259390 |
| exon | 259567 | 259926 |
| exon | 265690 | 265876 |
| exon | 265984 | 266077 |
| exon | 266399 | 266510 |
| exon | 266607 | 266717 |
| exon | 266867 | 267117 |
| exon | 267209 | 267314 |
| exon | 267959 | 270273 |
| CDS | 244445 | 245299 |
| CDS | 245408 | 246406 |
| CDS | 246482 | 247001 |
| CDS | 248353 | 248607 |
| CDS | 248683 | 248816 |
| CDS | 248902 | 249135 |
| CDS | 249207 | 249266 |
| CDS | 249489 | 249650 |
| CDS | 250399 | 250504 |
| CDS | 252128 | 252297 |
| CDS | 252808 | 253091 |
| CDS | 257287 | 257461 |
| CDS | 257848 | 257877 |
| CDS | 257997 | 258161 |
| CDS | 258239 | 258298 |
| CDS | 258457 | 258507 |
| CDS | 258583 | 258790 |
| CDS | 258861 | 259390 |
| CDS | 259567 | 259926 |
| CDS | 265690 | 265876 |
| CDS | 265984 | 266077 |
| CDS | 266399 | 266510 |
| CDS | 266607 | 266717 |
| CDS | 266867 | 267117 |
| CDS | 267209 | 267314 |
| CDS | 267959 | 267988 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12830.6 | Nipped-B_C | 1134 | 1285 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005488 | binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.