Annotation of co-expression genes

PH01001536G0220's details annotation

1.Annotation

ICBR annotation: tubulin/FtsZ domain containing protein, putative, expressed

Blast result AT5G12250 : 0.00E+00
Blast annotation: beta-6 tubulin

2.Location

Scaffold: PH01001536
Strand: +

RegionStartEnd
gene126896130414
mRNA126896130414
exon126896127468
exon128131128400
exon129034130414
CDS127075127468
CDS128131128400
CDS129034129713

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00091.24Tubulin3211
PF03953.16Tubulin_C261381

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phagosometubulin betako04145K07375

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0005874microtubule
GO:0006184GTP catabolic process
GO:0007017microtubule-based process
GO:0043234protein complex
GO:0051258protein polymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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