Annotation of co-expression genes

PH01001543G0550's details annotation

1.Annotation

ICBR annotation: PPR repeat domain containing protein, putative, expressed

Blast result AT2G06000 : 6.00E-100
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein

2.Location

Scaffold: PH01001543
Strand: -

RegionStartEnd
gene321171324521
mRNA321171324521
exon321171324521
CDS321668323317

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01535.19PPR112137
PF13041.5PPR_2215264
PF13041.5PPR_2286334
PF13041.5PPR_2356405
PF13041.5PPR_2429475
PF01535.19PPR500521

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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