PH01001544G0210's details annotation
1.Annotation
ICBR annotation: signal peptide peptidase-like 2B, putative, expressed
Blast result AT1G63690 : 0.00E+00
Blast annotation: SIGNAL PEPTIDE PEPTIDASE-LIKE 2
2.Location
Scaffold: PH01001544
Strand: -
| Region | Start | End |
| gene | 168470 | 174587 |
| mRNA | 168470 | 174587 |
| exon | 168470 | 168989 |
| exon | 169338 | 169408 |
| exon | 169576 | 169718 |
| exon | 169800 | 169892 |
| exon | 170002 | 170055 |
| exon | 170135 | 170291 |
| exon | 170409 | 170443 |
| exon | 170729 | 170884 |
| exon | 170970 | 171121 |
| exon | 171289 | 171411 |
| exon | 172115 | 172226 |
| exon | 172319 | 172477 |
| exon | 173301 | 174587 |
| CDS | 168841 | 168989 |
| CDS | 169338 | 169408 |
| CDS | 169576 | 169718 |
| CDS | 169800 | 169892 |
| CDS | 170002 | 170055 |
| CDS | 170135 | 170291 |
| CDS | 170409 | 170443 |
| CDS | 170729 | 170884 |
| CDS | 170970 | 171121 |
| CDS | 171289 | 171411 |
| CDS | 172115 | 172226 |
| CDS | 172319 | 172477 |
| CDS | 173301 | 173429 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02225.21 | PA | 90 | 164 |
| PF04258.12 | Peptidase_A22B | 242 | 466 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.