PH01001548G0500's details annotation
1.Annotation
ICBR annotation: ATP synthase, putative, expressed
Blast result AT5G08690 : 0.00E+00
Blast annotation: ATP synthase alpha/beta family protein
2.Location
Scaffold: PH01001548
Strand: +
| Region | Start | End |
| gene | 330068 | 335064 |
| mRNA | 330068 | 335064 |
| exon | 330068 | 330140 |
| exon | 330409 | 330484 |
| exon | 330597 | 330685 |
| exon | 330811 | 330928 |
| exon | 331002 | 331105 |
| exon | 331189 | 331347 |
| exon | 331574 | 331798 |
| exon | 331884 | 332195 |
| exon | 332270 | 332323 |
| exon | 334173 | 335064 |
| CDS | 330138 | 330140 |
| CDS | 330409 | 330484 |
| CDS | 330597 | 330685 |
| CDS | 330811 | 330928 |
| CDS | 331002 | 331105 |
| CDS | 331189 | 331347 |
| CDS | 331574 | 331798 |
| CDS | 331884 | 332195 |
| CDS | 332270 | 332323 |
| CDS | 334173 | 334286 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001199 | proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), CMGC_CDK-PITSLRE (from iTAK) HB-other Transcription_Regulator(from PlantTFDB) C3H Transcription_Regulator(from PlantTFDB) tricarboxylic acid cycle, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Pyruvate_metabolism Carbon_fixation_pathways_in_prokaryotes Methane_metabolism Carbon_fixation_in_photosynthetic_organisms |
| coexpression network | CFinderM001800 | proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, hydrogen ion transporting ATP synthase activity, rotational mechanism, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), ATP biosynthetic process, ATP metabolic process, ATP_catabolic_process proton transport, nucleoside-triphosphatase activity, double-stranded RNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00006.24 | ATP-synt_ab | 54 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0015986 | ATP synthesis coupled proton transport |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances |
| GO:0017111 | nucleoside-triphosphatase activity |
| GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain |
| GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.