PH01001551G0090's details annotation
1.Annotation
ICBR annotation: F-box domain containing protein, expressed
Blast result AT3G07550 : 1.00E-73
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01001551
Strand: -
| Region | Start | End |
| gene | 44259 | 45696 |
| mRNA | 44259 | 45696 |
| exon | 44259 | 45696 |
| CDS | 44762 | 45694 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001070 | GTnc GlycosylTransferases checkpoint_clamp_complex cell_cycle_checkpoint DNA_damage_checkpoint cullin-RING ubiquitin ligase complex, |
| coexpression network | CFinderM001256 | checkpoint_clamp_complex CK1_CK1-Pl (from iTAK) Nicotinate_and_nicotinamide_metabolism cell_cycle_checkpoint DNA_damage_checkpoint NAD+ synthase (glutamine-hydrolyzing) activity, NAD biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13516.5 | LRR_6 | 184 | 205 |
| PF13516.5 | LRR_6 | 233 | 257 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.