PH01001555G0230's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type, domain containing protein, expressed
Blast result AT4G20930 : 2.00E-108
Blast annotation: 6-phosphogluconate dehydrogenase family protein
2.Location
Scaffold: PH01001555
Strand: +
| Region | Start | End |
| gene | 172127 | 180253 |
| mRNA | 172127 | 180253 |
| exon | 172127 | 172447 |
| exon | 172969 | 173058 |
| exon | 173455 | 173907 |
| exon | 174069 | 174243 |
| exon | 174340 | 174634 |
| exon | 174880 | 174952 |
| exon | 175021 | 175066 |
| exon | 175520 | 175599 |
| exon | 175677 | 175907 |
| exon | 176279 | 176308 |
| exon | 176491 | 176618 |
| exon | 178183 | 178297 |
| exon | 178555 | 178705 |
| exon | 178894 | 178976 |
| exon | 179106 | 179201 |
| exon | 179297 | 179439 |
| exon | 179621 | 179705 |
| exon | 179970 | 180049 |
| exon | 180118 | 180253 |
| CDS | 172403 | 172447 |
| CDS | 172969 | 173058 |
| CDS | 173455 | 173907 |
| CDS | 174069 | 174243 |
| CDS | 174340 | 174634 |
| CDS | 174880 | 174952 |
| CDS | 175021 | 175066 |
| CDS | 175520 | 175599 |
| CDS | 175677 | 175907 |
| CDS | 176279 | 176308 |
| CDS | 176491 | 176618 |
| CDS | 178183 | 178297 |
| CDS | 178555 | 178705 |
| CDS | 178894 | 178976 |
| CDS | 179106 | 179201 |
| CDS | 179297 | 179439 |
| CDS | 179621 | 179705 |
| CDS | 179970 | 180049 |
| CDS | 180118 | 180205 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12906.6 | RINGv | 270 | 317 |
| PF03446.14 | NAD_binding_2 | 550 | 691 |
| PF14833.5 | NAD_binding_11 | 694 | 820 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004616 | phosphogluconate dehydrogenase (decarboxylating) activity |
| GO:0006098 | pentose-phosphate shunt |
| GO:0008270 | zinc ion binding |
| GO:0008442 | 3-hydroxyisobutyrate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0050662 | coenzyme binding |
| GO:0051287 | NAD binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.