PH01001556G0500's details annotation
1.Annotation
ICBR annotation: transporter, monovalent cation:proton antiporter-2 family, putative, expressed
Blast result AT3G06370 : 1.50E-69
Blast annotation: sodium hydrogen exchanger 4
2.Location
Scaffold: PH01001556
Strand: -
| Region | Start | End |
| gene | 323935 | 332063 |
| mRNA | 323935 | 332063 |
| exon | 323935 | 324842 |
| exon | 325179 | 325262 |
| exon | 325402 | 325445 |
| exon | 326437 | 326551 |
| exon | 327000 | 327066 |
| exon | 327193 | 327239 |
| exon | 327433 | 327627 |
| exon | 327709 | 327755 |
| exon | 328785 | 328882 |
| exon | 329311 | 329408 |
| exon | 329871 | 329974 |
| exon | 330048 | 330115 |
| exon | 330226 | 330344 |
| exon | 330435 | 332063 |
| CDS | 324504 | 324842 |
| CDS | 325179 | 325262 |
| CDS | 325402 | 325445 |
| CDS | 326437 | 326551 |
| CDS | 327000 | 327066 |
| CDS | 327193 | 327239 |
| CDS | 327433 | 327627 |
| CDS | 327709 | 327755 |
| CDS | 328785 | 328882 |
| CDS | 329311 | 329408 |
| CDS | 329871 | 329974 |
| CDS | 330048 | 330115 |
| CDS | 330226 | 330344 |
| CDS | 330435 | 330608 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00999.20 | Na_H_Exchanger | 191 | 374 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0015299 | solute:hydrogen antiporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.