PH01001559G0390's details annotation
1.Annotation
ICBR annotation: cation efflux family protein, putative, expressed
Blast result AT2G47830 : 1.90E-27
Blast annotation: Cation efflux family protein
2.Location
Scaffold: PH01001559
Strand: -
| Region | Start | End |
| gene | 297254 | 300611 |
| mRNA | 297254 | 300611 |
| exon | 297254 | 297908 |
| exon | 298120 | 298176 |
| exon | 298713 | 298948 |
| exon | 299515 | 299620 |
| exon | 299775 | 299837 |
| exon | 299946 | 300030 |
| exon | 300498 | 300611 |
| CDS | 297852 | 297908 |
| CDS | 298120 | 298176 |
| CDS | 298713 | 298948 |
| CDS | 299515 | 299620 |
| CDS | 299775 | 299837 |
| CDS | 299946 | 300030 |
| CDS | 300498 | 300523 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16916.4 | ZT_dimer | 19 | 93 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0008324 | cation transmembrane transporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.