PH01001563G0360's details annotation
1.Annotation
ICBR annotation: rRNA-processing protein FCF, putative, expressed
Blast result AT2G34570 : 6.10E-56
Blast annotation: PIN domain-like family protein
2.Location
Scaffold: PH01001563
Strand: +
| Region | Start | End |
| gene | 279130 | 282192 |
| mRNA | 279130 | 282192 |
| exon | 279130 | 280270 |
| exon | 280848 | 280968 |
| exon | 281183 | 281458 |
| exon | 281609 | 281674 |
| exon | 281999 | 282192 |
| CDS | 279993 | 280270 |
| CDS | 280848 | 280968 |
| CDS | 281183 | 281458 |
| CDS | 281609 | 281674 |
| CDS | 281999 | 282091 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001085 | |
| coexpression network | CFinderM001850 | lipid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04900.11 | Fcf1 | 86 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.