Annotation of co-expression genes

PH01001577G0230's details annotation

1.Annotation

ICBR annotation: tubulin/FtsZ domain containing protein, putative, expressed

Blast result AT5G62700 : 0.00E+00
Blast annotation: tubulin beta chain 3

2.Location

Scaffold: PH01001577
Strand: +

RegionStartEnd
gene152743153321
mRNA152743153321
exon152743153249
exon153293153321
CDS152856153249
CDS153293153306

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00091.24Tubulin3211
PF03953.16Tubulin_C261379

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phagosometubulin betako04145K07375

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0005874microtubule
GO:0006184GTP catabolic process
GO:0007017microtubule-based process
GO:0043234protein complex
GO:0051258protein polymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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