PH01001587G0070's details annotation
1.Annotation
ICBR annotation: aminotransferase, classes I and II, domain containing protein, expressed
Blast result AT4G33680 : 7.00E-177
Blast annotation: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
2.Location
Scaffold: PH01001587
Strand: +
| Region | Start | End |
| gene | 52046 | 59876 |
| mRNA | 52046 | 59876 |
| exon | 52046 | 55051 |
| exon | 55662 | 55803 |
| exon | 56063 | 56125 |
| exon | 56393 | 56500 |
| exon | 56760 | 56822 |
| exon | 56916 | 56985 |
| exon | 57184 | 57203 |
| exon | 57279 | 57383 |
| exon | 57479 | 57529 |
| exon | 57711 | 58031 |
| exon | 58206 | 58412 |
| exon | 58489 | 59876 |
| CDS | 54807 | 55051 |
| CDS | 55662 | 55803 |
| CDS | 56063 | 56125 |
| CDS | 56393 | 56500 |
| CDS | 56760 | 56822 |
| CDS | 56916 | 56985 |
| CDS | 57184 | 57203 |
| CDS | 57279 | 57383 |
| CDS | 57479 | 57529 |
| CDS | 57711 | 58031 |
| CDS | 58206 | 58412 |
| CDS | 58489 | 58782 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000273 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity lysine biosynthetic process via diaminopimelate, RLK-Pelle_LRR-Xb-1 (from iTAK) MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM001391 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity C3H Transcription_Regulator(from PlantTFDB) lysine biosynthetic process via diaminopimelate, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 238 | 557 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine biosynthesis | LL-diaminopimelate aminotransferase [EC:2.6.1.83] | ko00300 | K10206 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009058 | biosynthetic process |
| GO:0009089 | lysine biosynthetic process via diaminopimelate |
| GO:0010285 | L,L-diaminopimelate aminotransferase activity |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.