PH01001587G0260's details annotation
1.Annotation
ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed
Blast result AT3G62660 : 1.90E-88
Blast annotation: galacturonosyltransferase-like 7
2.Location
Scaffold: PH01001587
Strand: +
| Region | Start | End |
| gene | 159612 | 162700 |
| mRNA | 159612 | 162700 |
| exon | 159612 | 161861 |
| exon | 162005 | 162700 |
| CDS | 161652 | 161861 |
| CDS | 162005 | 162421 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001700 | leucine biosynthetic process, tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, 2-isopropylmalate synthase activity, |
| coexpression network | CFinderM001717 | CBM49 Carbohydrate-Binding_Modules GH9 Glycoside_Hydrolases lysyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis membrane coat, lysine-tRNA ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 75 | 179 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.