PH01001589G0340's details annotation
1.Annotation
ICBR annotation: ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed
Blast result AT5G19330 : 3.00E-84
Blast annotation: ARM repeat protein interacting with ABF2
2.Location
Scaffold: PH01001589
Strand: -
| Region | Start | End |
| gene | 277859 | 286257 |
| mRNA | 277859 | 286257 |
| exon | 277859 | 280201 |
| exon | 280706 | 280798 |
| exon | 281953 | 282027 |
| exon | 282143 | 282263 |
| exon | 282350 | 282522 |
| exon | 282912 | 286257 |
| CDS | 279797 | 280201 |
| CDS | 280706 | 280798 |
| CDS | 281953 | 282027 |
| CDS | 282143 | 282263 |
| CDS | 282350 | 282522 |
| CDS | 282912 | 283502 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00514.22 | Arm | 198 | 244 |
| PF00514.22 | Arm | 251 | 286 |
| PF00514.22 | Arm | 289 | 319 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.