Annotation of co-expression genes

PH01001614G0080's details annotation

1.Annotation

ICBR annotation: phosphatidylinositolglycan class N family protein, expressed

Blast result AT3G01380 : 0.00E+00
Blast annotation: transferases;sulfuric ester hydrolases;catalytics;transferases

2.Location

Scaffold: PH01001614
Strand: +

RegionStartEnd
gene5688161611
mRNA5688161611
exon5688157306
exon5741957610
exon5869058845
exon5933759645
exon5995960245
exon6028260356
exon6045960525
exon6081061611
CDS5709657306
CDS5741957610
CDS5869058845
CDS5933759645
CDS5995960245
CDS6028260356
CDS6045960525
CDS6081061150

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04987.13PigN484523

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycosylphosphatidylinositol(GPI)-anchor biosynthesisphosphatidylinositol glycan, class N [EC:2.7.-.-]ko00563K05285

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005789endoplasmic reticulum membrane
GO:0006506GPI anchor biosynthetic process
GO:0008152metabolic process
GO:0016740transferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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