PH01001620G0250's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001620
Strand: +
| Region | Start | End |
| gene | 189265 | 196379 |
| mRNA | 189265 | 196379 |
| exon | 189265 | 190393 |
| exon | 190829 | 190961 |
| exon | 191580 | 191779 |
| exon | 192092 | 192150 |
| exon | 192228 | 192322 |
| exon | 192406 | 192508 |
| exon | 192614 | 192708 |
| exon | 192777 | 192839 |
| exon | 193886 | 193944 |
| exon | 193983 | 194047 |
| exon | 195027 | 195076 |
| exon | 195522 | 195630 |
| exon | 195714 | 196379 |
| CDS | 190003 | 190393 |
| CDS | 190829 | 190961 |
| CDS | 191580 | 191779 |
| CDS | 192092 | 192150 |
| CDS | 192228 | 192322 |
| CDS | 192406 | 192508 |
| CDS | 192614 | 192708 |
| CDS | 192777 | 192839 |
| CDS | 193886 | 193944 |
| CDS | 193983 | 194047 |
| CDS | 195027 | 195076 |
| CDS | 195522 | 195630 |
| CDS | 195714 | 195848 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 262 | 295 |
| PF00400.31 | WD40 | 482 | 514 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.