PH01001621G0230's details annotation
1.Annotation
ICBR annotation: inner membrane protein, putative, expressed
Blast result AT5G62050 : 3.40E-41
Blast annotation: homolog of yeast oxidase assembly 1 (OXA1)
2.Location
Scaffold: PH01001621
Strand: +
| Region | Start | End |
| gene | 153725 | 162290 |
| mRNA | 153725 | 162290 |
| exon | 153725 | 155233 |
| exon | 156610 | 156700 |
| exon | 157191 | 157268 |
| exon | 157376 | 157428 |
| exon | 157939 | 157983 |
| exon | 158664 | 158759 |
| exon | 160110 | 160241 |
| exon | 160314 | 160421 |
| exon | 161238 | 161288 |
| exon | 161753 | 161807 |
| exon | 161911 | 162290 |
| CDS | 154826 | 155233 |
| CDS | 156610 | 156700 |
| CDS | 157191 | 157268 |
| CDS | 157376 | 157428 |
| CDS | 157939 | 157983 |
| CDS | 158664 | 158759 |
| CDS | 160110 | 160241 |
| CDS | 160314 | 160421 |
| CDS | 161238 | 161288 |
| CDS | 161753 | 161807 |
| CDS | 161911 | 162137 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0015074 | DNA integration |
| GO:0016021 | integral to membrane |
| GO:0051205 | protein insertion into membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.