PH01001634G0210's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT1G08070 : 3.60E-97
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001634
Strand: -
| Region | Start | End |
| gene | 137204 | 145770 |
| mRNA | 137204 | 145770 |
| exon | 137204 | 137955 |
| exon | 138062 | 138284 |
| exon | 139197 | 139309 |
| exon | 139407 | 139533 |
| exon | 140736 | 140796 |
| exon | 140867 | 142159 |
| exon | 143172 | 143648 |
| exon | 145683 | 145770 |
| CDS | 137759 | 137955 |
| CDS | 138062 | 138284 |
| CDS | 139197 | 139309 |
| CDS | 139407 | 139533 |
| CDS | 140736 | 140796 |
| CDS | 140867 | 142159 |
| CDS | 143172 | 143648 |
| CDS | 145683 | 145711 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 189 | 217 |
| PF13041.5 | PPR_2 | 287 | 335 |
| PF01535.19 | PPR | 363 | 386 |
| PF13041.5 | PPR_2 | 389 | 436 |
| PF01535.19 | PPR | 464 | 488 |
| PF02301.17 | HORMA | 640 | 741 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.