PH01001639G0240's details annotation
1.Annotation
ICBR annotation: transporter, monovalent cation:proton antiporter-2 family, putative, expressed
Blast result AT3G05030 : 0.00E+00
Blast annotation: sodium hydrogen exchanger 2
2.Location
Scaffold: PH01001639
Strand: +
| Region | Start | End |
| gene | 151753 | 156956 |
| mRNA | 151753 | 156956 |
| exon | 151753 | 152417 |
| exon | 152517 | 152635 |
| exon | 153673 | 153794 |
| exon | 153949 | 154008 |
| exon | 154102 | 154148 |
| exon | 154245 | 154439 |
| exon | 154535 | 154581 |
| exon | 154667 | 154733 |
| exon | 154827 | 154927 |
| exon | 155042 | 155143 |
| exon | 155243 | 155381 |
| exon | 155456 | 155518 |
| exon | 155941 | 156024 |
| exon | 156633 | 156956 |
| CDS | 152241 | 152417 |
| CDS | 152517 | 152635 |
| CDS | 153673 | 153794 |
| CDS | 153949 | 154008 |
| CDS | 154102 | 154148 |
| CDS | 154245 | 154439 |
| CDS | 154535 | 154581 |
| CDS | 154667 | 154733 |
| CDS | 154827 | 154927 |
| CDS | 155042 | 155143 |
| CDS | 155243 | 155381 |
| CDS | 155456 | 155518 |
| CDS | 155941 | 156024 |
| CDS | 156633 | 156947 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00999.20 | Na_H_Exchanger | 29 | 452 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0015299 | solute:hydrogen antiporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.