PH01001642G0300's details annotation
1.Annotation
ICBR annotation: DUF1336 domain containing protein, expressed
Blast result AT1G59650 : 2.00E-134
Blast annotation: Protein of unknown function (DUF1336)
2.Location
Scaffold: PH01001642
Strand: +
| Region | Start | End |
| gene | 221378 | 230604 |
| mRNA | 221378 | 230604 |
| exon | 221378 | 221964 |
| exon | 222191 | 222261 |
| exon | 222331 | 222417 |
| exon | 222511 | 222927 |
| exon | 223900 | 224035 |
| exon | 224165 | 224327 |
| exon | 228338 | 228466 |
| exon | 229204 | 229398 |
| exon | 229582 | 229704 |
| exon | 229791 | 230604 |
| CDS | 221747 | 221964 |
| CDS | 222191 | 222261 |
| CDS | 222331 | 222417 |
| CDS | 222511 | 222927 |
| CDS | 223900 | 224035 |
| CDS | 224165 | 224327 |
| CDS | 228338 | 228466 |
| CDS | 229204 | 229398 |
| CDS | 229582 | 229704 |
| CDS | 229791 | 229892 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07059.11 | DUF1336 | 293 | 534 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.