PH01001646G0080's details annotation
1.Annotation
ICBR annotation: nicotiana lesion-inducing like, putative, expressed
Blast result AT5G43460 : 2.60E-38
Blast annotation: HR-like lesion-inducing protein-related
2.Location
Scaffold: PH01001646
Strand: +
| Region | Start | End |
| gene | 78027 | 82495 |
| mRNA | 78027 | 82495 |
| exon | 78027 | 78321 |
| exon | 79577 | 79691 |
| exon | 79810 | 79899 |
| exon | 81677 | 81775 |
| exon | 81878 | 82495 |
| CDS | 78254 | 78321 |
| CDS | 79577 | 79691 |
| CDS | 79810 | 79899 |
| CDS | 81677 | 81775 |
| CDS | 81878 | 81982 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05514.10 | HR_lesion | 1 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.