PH01001651G0070's details annotation
1.Annotation
ICBR annotation: AML1, putative, expressed
Blast result AT1G29400 : 4.40E-89
Blast annotation: MEI2-like protein 5
2.Location
Scaffold: PH01001651
Strand: +
| Region | Start | End |
| gene | 55048 | 58409 |
| mRNA | 55048 | 58409 |
| exon | 55048 | 55415 |
| exon | 55496 | 55612 |
| exon | 55816 | 55967 |
| exon | 56699 | 57585 |
| exon | 57675 | 57837 |
| exon | 57938 | 58022 |
| exon | 58305 | 58409 |
| CDS | 55350 | 55415 |
| CDS | 55496 | 55612 |
| CDS | 55816 | 55967 |
| CDS | 56699 | 57585 |
| CDS | 57675 | 57837 |
| CDS | 57938 | 58022 |
| CDS | 58305 | 58319 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 35 | 99 |
| PF04059.11 | RRM_2 | 451 | 490 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.