PH01001652G0290's details annotation
1.Annotation
ICBR annotation: copper/zinc superoxide dismutase, putative, expressed
Blast result AT2G28190 : 8.10E-73
Blast annotation: copper/zinc superoxide dismutase 2
2.Location
Scaffold: PH01001652
Strand: -
| Region | Start | End |
| gene | 232441 | 235311 |
| mRNA | 232441 | 235311 |
| exon | 232441 | 232617 |
| exon | 233047 | 233100 |
| exon | 233181 | 233256 |
| exon | 233364 | 233395 |
| exon | 233497 | 233592 |
| exon | 233863 | 233902 |
| exon | 233980 | 234041 |
| exon | 235015 | 235311 |
| CDS | 232592 | 232617 |
| CDS | 233047 | 233100 |
| CDS | 233181 | 233256 |
| CDS | 233364 | 233395 |
| CDS | 233497 | 233592 |
| CDS | 233863 | 233902 |
| CDS | 233980 | 234041 |
| CDS | 235015 | 235237 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00080.19 | Sod_Cu | 59 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Peroxisome | superoxide dismutase, Cu-Zn family [EC:1.15.1.1] | ko04146 | K04565 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004784 | superoxide dismutase activity |
| GO:0006801 | superoxide metabolic process |
| GO:0046872 | metal ion binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.