PH01001653G0210's details annotation
1.Annotation
ICBR annotation: DIRP family protein, putative, expressed
Blast result AT3G21430 : 3.60E-62
Blast annotation: DNA binding
2.Location
Scaffold: PH01001653
Strand: -
| Region | Start | End |
| gene | 131056 | 137488 |
| mRNA | 131056 | 137488 |
| exon | 131056 | 131695 |
| exon | 131777 | 132033 |
| exon | 134118 | 134307 |
| exon | 134905 | 134982 |
| exon | 135453 | 135515 |
| exon | 135736 | 137488 |
| CDS | 131306 | 131695 |
| CDS | 131777 | 132033 |
| CDS | 134118 | 134307 |
| CDS | 134905 | 134982 |
| CDS | 135453 | 135515 |
| CDS | 135736 | 135816 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 5 | 45 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.